Transcript: ENST00000573309.1 CIITA-004

Description

class II, major histocompatibility complex, transactivator [Source:HGNC Symbol;Acc:7067]

Gene Synonyms

C2TA, CIITAIV, MHC2TA, NLRA

Location

Chromosome 16: 10,971,073-11,002,744 forward strand.

About this transcript

This transcript has 10 exons, is associated with 17776 variant alleles and maps to 450 oligo probes.

Gene

This transcript is a product of gene ENSG00000179583.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324288.8	CIITA-001	9438	1130aa	ENSP00000316328.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10544	I3L2E5 P33076	NM_001286402.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381835.5	CIITA-002	2344	546aa	ENSP00000371257.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66943	E9PFE0	NM_001286403.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576601.1	CIITA-008	626	177aa	ENSP00000459608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2E5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571186.1	CIITA-006	1041	172aa	ENSP00000459829.1	Nonsense mediated decay		I3L2P7	-	-
ENST00000537380.1	CIITA-005	1062	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571545.1	CIITA-012	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572665.1	CIITA-009	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570546.1	CIITA-003	5342	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573309.1	CIITA-004	3366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575513.1	CIITA-010	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571190.1	CIITA-007	479	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 3,366 bps,

Version

ENST00000573309.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000436689 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000573309.1 CIITA-004

Summary