Transcript: ENST00000381835.5 CIITA-002

Description

class II, major histocompatibility complex, transactivator [Source:HGNC Symbol;Acc:7067]

Gene Synonyms

C2TA, CIITAIV, MHC2TA, NLRA

Location

Chromosome 16: 10,971,067-11,018,294 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 19 domains and features, is associated with 25950 variant alleles and maps to 504 oligo probes.

Gene

This transcript is a product of gene ENSG00000179583.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324288.8	CIITA-001	9438	1130aa	ENSP00000316328.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10544	I3L2E5 P33076	NM_001286402.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381835.5	CIITA-002	2344	546aa	ENSP00000371257.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66943	E9PFE0	NM_001286403.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576601.1	CIITA-008	626	177aa	ENSP00000459608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2E5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571186.1	CIITA-006	1041	172aa	ENSP00000459829.1	Nonsense mediated decay		I3L2P7	-	-
ENST00000537380.1	CIITA-005	1062	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571545.1	CIITA-012	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572665.1	CIITA-009	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570546.1	CIITA-003	5342	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573309.1	CIITA-004	3366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575513.1	CIITA-010	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571190.1	CIITA-007	479	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 18, Coding exons: 17, Transcript length: 2,344 bps, Translation length: 546 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS66943

Version

ENST00000381835.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000436686 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000381835.5 CIITA-002

Summary