In the first quarter of 2020 we will be removing all data other than for human from this archive website. Please read our blog post for full details.

Description

class II, major histocompatibility complex, transactivator [Source:HGNC Symbol;Acc:7067]

Gene Synonyms

C2TA, CIITAIV, MHC2TA, NLRA

Location
About this transcript

This transcript has 20 exons, is annotated with 36 domains and features, is associated with 16175 variant alleles and maps to 651 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CIITA-001ENST00000324288.894381130aaENSP00000316328.8
 
Protein coding
CCDS10544I3L2E5 P33076 NM_000246
NM_001286402
NP_000237
NP_001273331
GENCODE basic
CIITA-002ENST00000381835.52344546aaENSP00000371257.5
 
Protein coding
CCDS66943E9PFE0 NM_001286403
NP_001273332
GENCODE basic
CIITA-008ENST00000576601.1626177aaENSP00000459608.1
 
Protein coding
-I3L2E5 -CDS 3' incomplete
CIITA-006ENST00000571186.11041172aaENSP00000459829.1
 
Nonsense mediated decay
-I3L2P7 --
CIITA-005ENST00000537380.11062No protein-
 
Processed transcript
----
CIITA-012ENST00000571545.1567No protein-
 
Processed transcript
----
CIITA-009ENST00000572665.1560No protein-
 
Processed transcript
----
CIITA-003ENST00000570546.15342No protein-
 
Retained intron
----
CIITA-004ENST00000573309.13366No protein-
 
Retained intron
----
CIITA-010ENST00000575513.1516No protein-
 
Retained intron
----
CIITA-007ENST00000571190.1479No protein-
 
Retained intron
----
Statistics

Exons: 20, Coding exons: 19, Transcript length: 9,438 bps, Translation length: 1,130 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS10544

Uniprot

This transcript corresponds to the following Uniprot identifiers: P33076

Version

ENST00000324288.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000251966 (version 2)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays