Transcript: ENST00000373672.3 COL16A1-001

Description

collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]

Gene Synonyms

447AA

Location

Chromosome 1: 32,117,848-32,169,920 reverse strand.

About this transcript

This transcript has 71 exons, is annotated with 40 domains and features, is associated with 23585 variant alleles and maps to 1743 oligo probes.

Gene

This transcript is a product of gene ENSG00000084636.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373672.3	COL16A1-001	5736	1604aa	ENSP00000362776.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41297	Q07092	NM_001856.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000271069.6	COL16A1-201	5584	1604aa	ENSP00000271069.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NDR9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373668.3	COL16A1-005	3643	966aa	ENSP00000362772.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NCT7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373667.4	COL16A1-015	924	308aa	ENSP00000362771.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BY97	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000458715.1	COL16A1-013	706	235aa	ENSP00000411457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3F0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000440437.1	COL16A1-017	672	224aa	ENSP00000390281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZL8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000461217.1	COL16A1-003	852	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482478.1	COL16A1-004	797	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474000.1	COL16A1-014	676	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468459.1	COL16A1-012	620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529928.1	COL16A1-019	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532877.1	COL16A1-018	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466829.1	COL16A1-007	254	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488128.2	COL16A1-010	2854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488897.1	COL16A1-006	2423	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470799.1	COL16A1-009	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479100.1	COL16A1-011	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482910.1	COL16A1-008	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 71, Coding exons: 70, Transcript length: 5,736 bps, Translation length: 1,604 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q07092

CCDS

This transcript is a member of the Human CCDS set: CCDS41297

Version

ENST00000373672.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000011057 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000373672.3 COL16A1-001

Summary