Transcript: ENST00000440437.1 COL16A1-017

Description

collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]

Gene Synonyms

447AA

Location

Chromosome 1: 32,122,001-32,131,682 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 12 domains and features, is associated with 4321 variant alleles and maps to 271 oligo probes.

Gene

This transcript is a product of gene ENSG00000084636.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000373672.3	COL16A1-001	5736	1604aa	ENSP00000362776.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41297	Q07092	NM_001856.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000271069.6	COL16A1-201	5584	1604aa	ENSP00000271069.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NDR9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373668.3	COL16A1-005	3643	966aa	ENSP00000362772.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NCT7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373667.4	COL16A1-015	924	308aa	ENSP00000362771.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BY97	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000458715.1	COL16A1-013	706	235aa	ENSP00000411457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3F0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000440437.1	COL16A1-017	672	224aa	ENSP00000390281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZL8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000461217.1	COL16A1-003	852	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482478.1	COL16A1-004	797	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474000.1	COL16A1-014	676	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468459.1	COL16A1-012	620	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000529928.1	COL16A1-019	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532877.1	COL16A1-018	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466829.1	COL16A1-007	254	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488128.2	COL16A1-010	2854	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488897.1	COL16A1-006	2423	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470799.1	COL16A1-009	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479100.1	COL16A1-011	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482910.1	COL16A1-008	676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 672 bps, Translation length: 224 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000440437.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000091416 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000440437.1 COL16A1-017

Summary