Gene: CIITA ENSG00000179583

Description

class II, major histocompatibility complex, transactivator [Source:HGNC Symbol;Acc:7067]

Gene Synonyms

C2TA, CIITAIV, MHC2TA, NLRA

Location

Chromosome 16: 10,971,055-11,026,079 forward strand.

GRCh37:CM000678.1

About this gene

This gene has 11 transcripts (splice variants), 6 paralogues and is associated with 61 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324288.8	CIITA-001	9438	1130aa	ENSP00000316328.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10544	I3L2E5 P33076	NM_001286402.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000381835.5	CIITA-002	2344	546aa	ENSP00000371257.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66943	E9PFE0	NM_001286403.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000576601.1	CIITA-008	626	177aa	ENSP00000459608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2E5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571186.1	CIITA-006	1041	172aa	ENSP00000459829.1	Nonsense mediated decay		I3L2P7	-	-
ENST00000537380.1	CIITA-005	1062	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571545.1	CIITA-012	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572665.1	CIITA-009	560	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570546.1	CIITA-003	5342	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573309.1	CIITA-004	3366	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000575513.1	CIITA-010	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000571190.1	CIITA-007	479	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

EMBL-EBI User Survey 2024

Gene: CIITA ENSG00000179583

Summary

EMBL-EBI User Survey 2024

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Gene: CIITA ENSG00000179583

Summary