Transcript: ENST00000570208.2 ONECUT1-005

Description

one cut homeobox 1 [Source:HGNC Symbol;Acc:8138]

Gene Synonyms

HNF-6, HNF6, HNF6A

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 2164 variant alleles and maps to 76 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305901.5	ONECUT1-001	1640	465aa	ENSP00000302630.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10150	B2CNW3 Q9UBC0	NM_004498.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560699.2	ONECUT1-003	996	66aa	ENSP00000453718.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YMS2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570208.2	ONECUT1-005	1638	182aa	ENSP00000476168.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561401.2	ONECUT1-002	455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 1,638 bps, Translation length: 182 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000570208.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000419930 (version 2)