Transcript: ENST00000490101.1 SRM-004

Description

spermidine synthase [Source:HGNC Symbol;Acc:11296]

Gene Synonyms

PAPT, SPDSY, SPS1, SRML1

Location

About this transcript

This transcript has 2 exons, is annotated with 3 domains and features, is associated with 721 variant alleles and maps to 271 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376957.2	SRM-001	1266	302aa	ENSP00000366156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS125	P19623	NM_003132.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487300.1	SRM-007	611	119aa	ENSP00000468760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490101.1	SRM-004	461	83aa	ENSP00000465966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465788.1	SRM-006	402	134aa	ENSP00000467669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000459997.1	SRM-005	731	93aa	ENSP00000465687.1	Nonsense mediated decay		K7EKM4	-	-
ENST00000475189.1	SRM-002	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 461 bps, Translation length: 83 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000490101.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006059 (version 2)