Transcript: ENST00000475189.1 SRM-002

Description

spermidine synthase [Source:HGNC Symbol;Acc:11296]

Gene Synonyms

PAPT, SPDSY, SPS1, SRML1

Location

About this transcript

This transcript has 2 exons, is associated with 392 variant alleles and maps to 274 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376957.2	SRM-001	1266	302aa	ENSP00000366156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS125	P19623	NM_003132.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487300.1	SRM-007	611	119aa	ENSP00000468760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490101.1	SRM-004	461	83aa	ENSP00000465966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465788.1	SRM-006	402	134aa	ENSP00000467669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000459997.1	SRM-005	731	93aa	ENSP00000465687.1	Nonsense mediated decay		K7EKM4	-	-
ENST00000475189.1	SRM-002	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 545 bps,

Version

ENST00000475189.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006057 (version 1)