Transcript: ENST00000376957.2 SRM-001

Description

spermidine synthase [Source:HGNC Symbol;Acc:11296]

Gene Synonyms

PAPT, SPDSY, SPS1, SRML1

Location

About this transcript

This transcript has 8 exons, is annotated with 11 domains and features, is associated with 3086 variant alleles and maps to 491 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376957.2	SRM-001	1266	302aa	ENSP00000366156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS125	P19623	NM_003132.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487300.1	SRM-007	611	119aa	ENSP00000468760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490101.1	SRM-004	461	83aa	ENSP00000465966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465788.1	SRM-006	402	134aa	ENSP00000467669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000459997.1	SRM-005	731	93aa	ENSP00000465687.1	Nonsense mediated decay		K7EKM4	-	-
ENST00000475189.1	SRM-002	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,266 bps, Translation length: 302 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19623

CCDS

This transcript is a member of the Human CCDS set: CCDS125

Version

ENST00000376957.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000006056 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.