Transcript: ENST00000537927.1 PPFIBP1-003

Description

PTPRF interacting protein, binding protein 1 (liprin beta 1) [Source:HGNC Symbol;Acc:9249]

Gene Synonyms

KIAA1230, L2, SGT2, hSGT2, hSgt2p

Location

Chromosome 12: 27,677,115-27,848,496 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 25 domains and features, is associated with 68058 variant alleles and maps to 1114 oligo probes.

Gene

This transcript is a product of gene ENSG00000110841.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318304.8	PPFIBP1-007	6001	1011aa	ENSP00000314724.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55812	F5H6Q7 Q86W92	NM_177444.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000228425.6	PPFIBP1-001	5933	1005aa	ENSP00000228425.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8713	F5H6Q7 Q86W92	NM_003622.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537927.1	PPFIBP1-003	5719	858aa	ENSP00000445425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55814	Q86W92	NM_001198915.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542629.1	PPFIBP1-008	3208	980aa	ENSP00000443442.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55813	F5H6Q7 Q86W92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545334.1	PPFIBP1-005	2805	109aa	ENSP00000438036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0E0 F5H6Q7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540114.1	PPFIBP1-002	2645	744aa	ENSP00000444304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539326.1	PPFIBP1-012	973	242aa	ENSP00000438174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535047.1	PPFIBP1-006	875	170aa	ENSP00000444046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6Q7 Q86W92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537261.1	PPFIBP1-016	616	205aa	ENSP00000443324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGH8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000538433.1	PPFIBP1-009	609	18aa	ENSP00000442462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542187.1	PPFIBP1-015	585	152aa	ENSP00000445132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H495 F5H6Q7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535575.1	PPFIBP1-010	559	86aa	ENSP00000437438.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6Q7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000545381.1	PPFIBP1-004	1191	281aa	ENSP00000445822.1	Non stop decay		F5H6Q7	-	-
ENST00000541633.1	PPFIBP1-014	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534917.1	PPFIBP1-011	937	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540503.1	PPFIBP1-017	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540256.1	PPFIBP1-013	424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 24, Transcript length: 5,719 bps, Translation length: 858 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86W92

CCDS

This transcript is a member of the Human CCDS set: CCDS55814

Version

ENST00000537927.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000402876 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000537927.1 PPFIBP1-003

Summary