Transcript: ENST00000459997.1 SRM-005

Description

spermidine synthase [Source:HGNC Symbol;Acc:11296]

Gene Synonyms

PAPT, SPDSY, SPS1, SRML1

Location

Chromosome 1: 11,116,068-11,120,077 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 2205 variant alleles and maps to 236 oligo probes.

Gene

This transcript is a product of gene ENSG00000116649.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376957.2	SRM-001	1266	302aa	ENSP00000366156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS125	P19623	NM_003132.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487300.1	SRM-007	611	119aa	ENSP00000468760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ESL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000490101.1	SRM-004	461	83aa	ENSP00000465966.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000465788.1	SRM-006	402	134aa	ENSP00000467669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000459997.1	SRM-005	731	93aa	ENSP00000465687.1	Nonsense mediated decay		K7EKM4	-	-
ENST00000475189.1	SRM-002	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 731 bps, Translation length: 93 residues

Version

ENST00000459997.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000006060 (version 2)

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Transcript: ENST00000459997.1 SRM-005

Summary