Description
PTPRF interacting protein, binding protein 1 (liprin beta 1) [Source:HGNC Symbol;Acc:9249]
Gene Synonyms
KIAA1230, L2, SGT2, hSGT2, hSgt2p
Location
Chromosome 12: 27,676,364-27,848,497 forward strand.
GRCh37:CM000674.1
About this gene
This gene has 17 transcripts (splice variants), 6 paralogues and is associated with 61 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000318304.8 | PPFIBP1-007 | 6001 | 1011aa | ENSP00000314724.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55812 | F5H6Q7 Q86W92 | NM_177444.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000228425.6 | PPFIBP1-001 | 5933 | 1005aa | ENSP00000228425.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8713 | F5H6Q7 Q86W92 | NM_003622.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000537927.1 | PPFIBP1-003 | 5719 | 858aa | ENSP00000445425.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55814 | Q86W92 | NM_001198915.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000542629.1 | PPFIBP1-008 | 3208 | 980aa | ENSP00000443442.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55813 | F5H6Q7 Q86W92 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000545334.1 | PPFIBP1-005 | 2805 | 109aa | ENSP00000438036.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H0E0 F5H6Q7 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000540114.1 | PPFIBP1-002 | 2645 | 744aa | ENSP00000444304.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GZP6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000539326.1 | PPFIBP1-012 | 973 | 242aa | ENSP00000438174.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000535047.1 | PPFIBP1-006 | 875 | 170aa | ENSP00000444046.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H6Q7 Q86W92 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000537261.1 | PPFIBP1-016 | 616 | 205aa | ENSP00000443324.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YGH8 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000538433.1 | PPFIBP1-009 | 609 | 18aa | ENSP00000442462.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000542187.1 | PPFIBP1-015 | 585 | 152aa | ENSP00000445132.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H495 F5H6Q7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000535575.1 | PPFIBP1-010 | 559 | 86aa | ENSP00000437438.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H6Q7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000545381.1 | PPFIBP1-004 | 1191 | 281aa | ENSP00000445822.1 | Non stop decay | F5H6Q7 | - | - | |
| ENST00000541633.1 | PPFIBP1-014 | 574 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000534917.1 | PPFIBP1-011 | 937 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000540503.1 | PPFIBP1-017 | 566 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000540256.1 | PPFIBP1-013 | 424 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
