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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SHOX2 ENSG00000168779

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Description

short stature homeobox 2 [Source:HGNC Symbol;Acc:10854]

Gene Synonyms

OG12, OG12X, SHOT

Location

Chromosome 3: 157,814,948-157,824,292 reverse strand.

GRCh37:CM000665.1

About this gene

This gene has 6 transcripts (splice variants) and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389589.4	SHOX2-001	2072	355aa	ENSP00000374240.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33884	O60902	NM_003030.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490689.2	SHOX2-004	2975	190aa	ENSP00000451888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NLG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425436.3	SHOX2-002	1890	331aa	ENSP00000398704.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43164	O60902	NM_006884.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483851.2	SHOX2-003	1796	319aa	ENSP00000419362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54664	A6NLG4 O60902	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441443.2	SHOX2-201	1171	190aa	ENSP00000397099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NLG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554685.1	SHOX2-006	761	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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