Transcript: ENST00000389589.4 SHOX2-001

Description

short stature homeobox 2 [Source:HGNC Symbol;Acc:10854]

Gene Synonyms

OG12, OG12X, SHOT

Location

Chromosome 3: 157,814,948-157,823,949 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 4729 variant alleles and maps to 424 oligo probes.

Gene

This transcript is a product of gene ENSG00000168779.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000490689.2	SHOX2-004	2975	190aa	ENSP00000451888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NLG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389589.4	SHOX2-001	2072	355aa	ENSP00000374240.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33884	O60902	NM_003030.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425436.3	SHOX2-002	1890	331aa	ENSP00000398704.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43164	O60902	NM_006884.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483851.2	SHOX2-003	1796	319aa	ENSP00000419362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54664	A6NLG4 O60902	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441443.2	SHOX2-201	1171	190aa	ENSP00000397099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NLG4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554685.1	SHOX2-006	761	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,072 bps, Translation length: 355 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O60902

CCDS

This transcript is a member of the Human CCDS set: CCDS33884

Version

ENST00000389589.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000352056 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000389589.4 SHOX2-001

Summary