Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:8919]
Gene Synonyms
MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location
Chromosome 6: 33,378,176-33,384,230 forward strand.
GRCh37:CM000668.1
View alleles of this gene on alternative sequences
About this gene
This gene has 11 transcripts (splice variants), 1 gene allele and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000374516.3 | PHF1-002 | 2330 | 567aa | ENSP00000363640.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS4777 | A2AB22 A2AB23 O43189 | NM_024165.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000374512.3 | PHF1-001 | 2224 | 457aa | ENSP00000363636.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS4778 | A2AB22 A2AB23 O43189 | NM_002636.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000427826.1 | PHF1-011 | 862 | 181aa | ENSP00000404788.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB25 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000428274.1 | PHF1-006 | 836 | 227aa | ENSP00000392697.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB22 A2AB23 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000427004.1 | PHF1-005 | 609 | 145aa | ENSP00000410494.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB22 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000487667.1 | PHF1-004 | 1930 | 393aa | ENSP00000432419.1 | Nonsense mediated decay | A2AB22 A2AB23 E9PQZ5 | - | - | |
| ENST00000495509.2 | PHF1-012 | 1752 | 419aa | ENSP00000434347.1 | Nonsense mediated decay | A2AB22 A2AB23 E9PQT8 | - | - | |
| ENST00000459809.1 | PHF1-007 | 461 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000486845.1 | PHF1-009 | 1099 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479029.1 | PHF1-010 | 933 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000488767.1 | PHF1-008 | 849 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
