Transcript: ENST00000487667.1 PHF1-004

Description

PHD finger protein 1 [Source:HGNC Symbol;Acc:8919]

Gene Synonyms

MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location

Chromosome 6: 33,378,467-33,383,648 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 16 domains and features, is associated with 2829 variant alleles and maps to 1144 oligo probes.

Gene

This transcript is a product of gene ENSG00000112511.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374516.3	PHF1-002	2330	567aa	ENSP00000363640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4777	A2AB22 A2AB23 O43189	NM_024165.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374512.3	PHF1-001	2224	457aa	ENSP00000363636.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4778	A2AB22 A2AB23 O43189	NM_002636.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427826.1	PHF1-011	862	181aa	ENSP00000404788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AB25	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000428274.1	PHF1-006	836	227aa	ENSP00000392697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AB22 A2AB23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427004.1	PHF1-005	609	145aa	ENSP00000410494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AB22	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487667.1	PHF1-004	1930	393aa	ENSP00000432419.1	Nonsense mediated decay		A2AB22 A2AB23 E9PQZ5	-	-
ENST00000495509.2	PHF1-012	1752	419aa	ENSP00000434347.1	Nonsense mediated decay		A2AB22 A2AB23 E9PQT8	-	-
ENST00000459809.1	PHF1-007	461	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486845.1	PHF1-009	1099	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479029.1	PHF1-010	933	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488767.1	PHF1-008	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 12, Transcript length: 1,930 bps, Translation length: 393 residues

Version

ENST00000487667.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000276478 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000487667.1 PHF1-004

Summary