Transcript: ENST00000459809.1 PHF1-007

Description

PHD finger protein 1 [Source:HGNC Symbol;Acc:8919]

Gene Synonyms

MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location

Chromosome 6: 33,378,535-33,380,556 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1140 variant alleles and maps to 391 oligo probes.

Gene

This transcript is a product of gene ENSG00000112511.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374516.3	PHF1-002	2330	567aa	ENSP00000363640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4777	A2AB22 A2AB23 O43189	NM_024165.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374512.3	PHF1-001	2224	457aa	ENSP00000363636.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4778	A2AB22 A2AB23 O43189	NM_002636.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427826.1	PHF1-011	862	181aa	ENSP00000404788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AB25	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000428274.1	PHF1-006	836	227aa	ENSP00000392697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AB22 A2AB23	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427004.1	PHF1-005	609	145aa	ENSP00000410494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AB22	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000487667.1	PHF1-004	1930	393aa	ENSP00000432419.1	Nonsense mediated decay		A2AB22 A2AB23 E9PQZ5	-	-
ENST00000495509.2	PHF1-012	1752	419aa	ENSP00000434347.1	Nonsense mediated decay		A2AB22 A2AB23 E9PQT8	-	-
ENST00000459809.1	PHF1-007	461	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486845.1	PHF1-009	1099	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479029.1	PHF1-010	933	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488767.1	PHF1-008	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 461 bps,

Version

ENST00000459809.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000276481 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000459809.1 PHF1-007

Summary