Transcript: ENST00000475344.1 LTN1-005

Description

listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:13082]

Gene Synonyms

C21orf10, C21orf98, FLJ11053, KIAA0714, LISTERIN, RNF160, ZNF294

Location

About this transcript

This transcript has 3 exons, is associated with 1067 variant alleles and maps to 113 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389194.2	LTN1-001	7749	1812aa	ENSP00000373846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33527	G1UI34 O94822	NM_015565.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361371.5	LTN1-008	7685	1766aa	ENSP00000354977.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G1UI34 O94822	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389195.2	LTN1-002	2714	813aa	ENSP00000373847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G1UI34 H7BYG8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483326.1	LTN1-004	1753	366aa	ENSP00000474690.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475344.1	LTN1-005	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486427.1	LTN1-006	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 696 bps,

Version

ENST00000475344.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000171855 (version 1)