Transcript: ENST00000361371.5 LTN1-008

Description

listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:13082]

Gene Synonyms

C21orf10, C21orf98, FLJ11053, KIAA0714, LISTERIN, RNF160, ZNF294

Location

About this transcript

This transcript has 30 exons, is annotated with 15 domains and features, is associated with 26428 variant alleles and maps to 984 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389194.2	LTN1-001	7749	1812aa	ENSP00000373846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33527	G1UI34 O94822	NM_015565.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361371.5	LTN1-008	7685	1766aa	ENSP00000354977.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G1UI34 O94822	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389195.2	LTN1-002	2714	813aa	ENSP00000373847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G1UI34 H7BYG8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483326.1	LTN1-004	1753	366aa	ENSP00000474690.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475344.1	LTN1-005	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486427.1	LTN1-006	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 30, Coding exons: 30, Transcript length: 7,685 bps, Translation length: 1,766 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O94822

Version

ENST00000361371.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000472108 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.