Transcript: ENST00000389195.2 LTN1-002

Description

listerin E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:13082]

Gene Synonyms

C21orf10, C21orf98, FLJ11053, KIAA0714, LISTERIN, RNF160, ZNF294

Location

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 13140 variant alleles and maps to 353 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389194.2	LTN1-001	7749	1812aa	ENSP00000373846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33527	G1UI34 O94822	NM_015565.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361371.5	LTN1-008	7685	1766aa	ENSP00000354977.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G1UI34 O94822	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389195.2	LTN1-002	2714	813aa	ENSP00000373847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G1UI34 H7BYG8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483326.1	LTN1-004	1753	366aa	ENSP00000474690.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475344.1	LTN1-005	696	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486427.1	LTN1-006	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,714 bps, Translation length: 813 residues

Version

ENST00000389195.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000171852 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.