Transcript: ENST00000487163.1 USP21-003

Description

ubiquitin specific peptidase 21 [Source:HGNC Symbol;Acc:12620]

Gene Synonyms

USP16, USP23

Location

Chromosome 1: 161,131,153-161,135,513 forward strand.

About this transcript

This transcript has 9 exons, is associated with 1996 variant alleles and maps to 599 oligo probes.

Gene

This transcript is a product of gene ENSG00000143258.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368002.3	USP21-201	2342	565aa	ENSP00000356981.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30920	Q9UK80	NM_001014443.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000289865.8	USP21-001	2195	565aa	ENSP00000289865.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30920	Q9UK80	NM_012475.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000368001.1	USP21-002	2095	551aa	ENSP00000356980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UK80	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000492950.1	USP21-004	1150	253aa	ENSP00000476344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479344.1	USP21-005	709	117aa	ENSP00000476830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493054.1	USP21-007	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486299.1	USP21-006	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487163.1	USP21-003	2514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485277.1	USP21-009	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482385.1	USP21-008	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 2,514 bps,

Version

ENST00000487163.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000080803 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000487163.1 USP21-003

Summary