Transcript: ENST00000289865.8 USP21-001

Description

ubiquitin specific peptidase 21 [Source:HGNC Symbol;Acc:12620]

Gene Synonyms

USP16, USP23

Location

Chromosome 1: 161,129,269-161,135,513 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 11 domains and features, is associated with 3084 variant alleles and maps to 690 oligo probes.

Gene

This transcript is a product of gene ENSG00000143258.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368002.3	USP21-201	2342	565aa	ENSP00000356981.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30920	Q9UK80	NM_001014443.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000289865.8	USP21-001	2195	565aa	ENSP00000289865.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30920	Q9UK80	NM_012475.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368001.1	USP21-002	2095	551aa	ENSP00000356980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UK80	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492950.1	USP21-004	1150	253aa	ENSP00000476344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000479344.1	USP21-005	709	117aa	ENSP00000476830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000493054.1	USP21-007	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486299.1	USP21-006	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487163.1	USP21-003	2514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485277.1	USP21-009	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482385.1	USP21-008	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,195 bps, Translation length: 565 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UK80

CCDS

This transcript is a member of the Human CCDS set: CCDS30920

Version

ENST00000289865.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000080801 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000289865.8 USP21-001

Summary