Transcript: ENST00000413758.1 COL6A2-005

Description

collagen, type VI, alpha 2 [Source:HGNC Symbol;Acc:2212]

Gene Synonyms

PP3610

Location

Chromosome 21: 47,540,474-47,545,808 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 4751 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSG00000142173.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300527.4	COL6A2-001	3461	1019aa	ENSP00000300527.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13728	C9JH44 P12110	NM_001849.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310645.5	COL6A2-201	3446	828aa	ENSP00000312529.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13730	C9JH44 P12110	NM_058175.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409416.1	COL6A2-003	3430	828aa	ENSP00000387115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13730	C9JH44 P12110	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357838.4	COL6A2-202	3153	918aa	ENSP00000350497.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13729	C9JH44 P12110	NM_058174.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397763.1	COL6A2-002	3101	918aa	ENSP00000380870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13729	C9JH44 P12110	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436769.1	COL6A2-004	919	180aa	ENSP00000390418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413758.1	COL6A2-005	750	250aa	ENSP00000395751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0M5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000460886.1	COL6A2-006	306	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485591.1	COL6A2-007	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 750 bps, Translation length: 250 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000413758.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000206975 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000413758.1 COL6A2-005

Summary