Transcript: ENST00000436769.1 COL6A2-004

Description

collagen, type VI, alpha 2 [Source:HGNC Symbol;Acc:2212]

Gene Synonyms

PP3610

Location

Chromosome 21: 47,518,711-47,532,318 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 6221 variant alleles and maps to 89 oligo probes.

Gene

This transcript is a product of gene ENSG00000142173.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300527.4	COL6A2-001	3461	1019aa	ENSP00000300527.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13728	C9JH44 P12110	NM_001849.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310645.5	COL6A2-201	3446	828aa	ENSP00000312529.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13730	C9JH44 P12110	NM_058175.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409416.1	COL6A2-003	3430	828aa	ENSP00000387115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13730	C9JH44 P12110	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357838.4	COL6A2-202	3153	918aa	ENSP00000350497.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13729	C9JH44 P12110	NM_058174.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397763.1	COL6A2-002	3101	918aa	ENSP00000380870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13729	C9JH44 P12110	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436769.1	COL6A2-004	919	180aa	ENSP00000390418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413758.1	COL6A2-005	750	250aa	ENSP00000395751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0M5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000460886.1	COL6A2-006	306	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485591.1	COL6A2-007	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 919 bps, Translation length: 180 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000436769.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000206974 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000436769.1 COL6A2-004

Summary