Transcript: ENST00000300527.4 COL6A2-001

Description

collagen, type VI, alpha 2 [Source:HGNC Symbol;Acc:2212]

Gene Synonyms

PP3610

Location

Chromosome 21: 47,518,011-47,552,763 forward strand.

About this transcript

This transcript has 28 exons, is annotated with 33 domains and features, is associated with 23305 variant alleles and maps to 813 oligo probes.

Gene

This transcript is a product of gene ENSG00000142173.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300527.4	COL6A2-001	3461	1019aa	ENSP00000300527.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13728	C9JH44 P12110	NM_001849.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310645.5	COL6A2-201	3446	828aa	ENSP00000312529.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13730	C9JH44 P12110	NM_058175.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409416.1	COL6A2-003	3430	828aa	ENSP00000387115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13730	C9JH44 P12110	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357838.4	COL6A2-202	3153	918aa	ENSP00000350497.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13729	C9JH44 P12110	NM_058174.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000397763.1	COL6A2-002	3101	918aa	ENSP00000380870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13729	C9JH44 P12110	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436769.1	COL6A2-004	919	180aa	ENSP00000390418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH44	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413758.1	COL6A2-005	750	250aa	ENSP00000395751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0M5	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000460886.1	COL6A2-006	306	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485591.1	COL6A2-007	777	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 28, Coding exons: 27, Transcript length: 3,461 bps, Translation length: 1,019 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P12110

CCDS

This transcript is a member of the Human CCDS set: CCDS13728

Version

ENST00000300527.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206971 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000300527.4 COL6A2-001

Summary