Transcript: ENST00000478155.1 PXDN-003

Description

peroxidasin homolog (Drosophila) [Source:HGNC Symbol;Acc:14966]

Gene Synonyms

D2S448, D2S448E, KIAA0230, MG50, PRG2, PXN, VPO, VPO1

Location

Chromosome 2: 1,637,664-1,680,279 reverse strand.

About this transcript

This transcript has 15 exons, is associated with 21657 variant alleles and maps to 532 oligo probes.

Gene

This transcript is a product of gene ENSG00000130508.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252804.4	PXDN-001	6808	1479aa	ENSP00000252804.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46221	Q92626	NM_012293.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433670.1	PXDN-002	2643	723aa	ENSP00000402738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000425171.1	PXDN-006	720	224aa	ENSP00000398363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J4I9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447941.1	PXDN-007	588	196aa	ENSP00000408701.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000453308.1	PXDN-009	740	76aa	ENSP00000414098.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000483018.1	PXDN-015	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477093.1	PXDN-010	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467191.1	PXDN-014	567	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477810.1	PXDN-012	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465809.1	PXDN-011	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485177.1	PXDN-008	519	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478155.1	PXDN-003	3840	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493654.1	PXDN-004	2796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493779.1	PXDN-013	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 0, Transcript length: 3,840 bps,

Version

ENST00000478155.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322507 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000478155.1 PXDN-003

Summary