Transcript: ENST00000504959.1 SNX25-003

Description

sorting nexin 25 [Source:HGNC Symbol;Acc:21883]

Gene Synonyms

SBBI31

Location

About this transcript

This transcript has 12 exons, is annotated with 8 domains and features, is associated with 20220 variant alleles and maps to 396 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000504273.1	SNX25-001	3323	840aa	ENSP00000426255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34116	B3KTI8 Q9H3E2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264694.8	SNX25-004	3264	840aa	ENSP00000264694.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34116	B3KTI8 Q9H3E2	NM_031953.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504959.1	SNX25-003	1868	142aa	ENSP00000424826.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512853.1	SNX25-002	1937	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506896.1	SNX25-005	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513433.1	SNX25-006	748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 4, Transcript length: 1,868 bps, Translation length: 142 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000504959.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000360758 (version 1)