Transcript: ENST00000504273.1 SNX25-001

Description

sorting nexin 25 [Source:HGNC Symbol;Acc:21883]

Gene Synonyms

SBBI31

Location

About this transcript

This transcript has 19 exons, is annotated with 23 domains and features, is associated with 43136 variant alleles and maps to 638 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000504273.1	SNX25-001	3323	840aa	ENSP00000426255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34116	B3KTI8 Q9H3E2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264694.8	SNX25-004	3264	840aa	ENSP00000264694.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34116	B3KTI8 Q9H3E2	NM_031953 NP_114159	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504959.1	SNX25-003	1868	142aa	ENSP00000424826.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512853.1	SNX25-002	1937	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506896.1	SNX25-005	518	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513433.1	SNX25-006	748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 3,323 bps, Translation length: 840 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS34116

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H3E2

Version

ENST00000504273.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000360756 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.