Description
pre-mRNA processing factor 39 [Source:HGNC Symbol;Acc:20314]
Gene Synonyms
FLJ11128, FLJ20666
Location
Chromosome 14: 45,553,302-45,585,485 forward strand.
GRCh37:CM000676.1
About this gene
This gene has 12 transcripts (splice variants).
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000355765.6 | PRPF39-003 | 2868 | 669aa | ENSP00000348010.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS9682 | Q86UA1 | NM_017922.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000553605.1 | PRPF39-009 | 582 | 140aa | ENSP00000452428.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | G3V5M7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000554081.1 | PRPF39-007 | 3223 | 17aa | ENSP00000451988.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000424478.1 | PRPF39-001 | 3174 | 152aa | ENSP00000390867.1 | Nonsense mediated decay | F8WB90 | - | - | |
ENST00000554439.1 | PRPF39-004 | 2982 | 152aa | ENSP00000451334.1 | Nonsense mediated decay | F8WB90 | - | - | |
ENST00000554429.1 | PRPF39-006 | 2977 | 152aa | ENSP00000451331.1 | Nonsense mediated decay | F8WB90 | - | - | |
ENST00000557477.1 | PRPF39-011 | 724 | 90aa | ENSP00000452516.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000477626.1 | PRPF39-002 | 3507 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000554785.1 | PRPF39-008 | 2121 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000556353.1 | PRPF39-013 | 687 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000556782.1 | PRPF39-010 | 645 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000556718.1 | PRPF39-012 | 499 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |