Transcript: ENST00000554081.1 PRPF39-007

Description

pre-mRNA processing factor 39 [Source:HGNC Symbol;Acc:20314]

Gene Synonyms

FLJ11128, FLJ20666

Location

Chromosome 14: 45,565,401-45,585,485 forward strand.

About this transcript

This transcript has 14 exons, is associated with 8421 variant alleles and maps to 446 oligo probes.

Gene

This transcript is a product of gene ENSG00000185246.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355765.6	PRPF39-003	2868	669aa	ENSP00000348010.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9682	Q86UA1	NM_017922.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553605.1	PRPF39-009	582	140aa	ENSP00000452428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5M7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554081.1	PRPF39-007	3223	17aa	ENSP00000451988.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000424478.1	PRPF39-001	3174	152aa	ENSP00000390867.1	Nonsense mediated decay		F8WB90	-	-
ENST00000554439.1	PRPF39-004	2982	152aa	ENSP00000451334.1	Nonsense mediated decay		F8WB90	-	-
ENST00000554429.1	PRPF39-006	2977	152aa	ENSP00000451331.1	Nonsense mediated decay		F8WB90	-	-
ENST00000557477.1	PRPF39-011	724	90aa	ENSP00000452516.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477626.1	PRPF39-002	3507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554785.1	PRPF39-008	2121	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556353.1	PRPF39-013	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556782.1	PRPF39-010	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556718.1	PRPF39-012	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 2, Transcript length: 3,223 bps, Translation length: 17 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000554081.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410467 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000554081.1 PRPF39-007

Summary