Transcript: ENST00000355765.6 PRPF39-003

Description

pre-mRNA processing factor 39 [Source:HGNC Symbol;Acc:20314]

Gene Synonyms

FLJ11128, FLJ20666

Location

Chromosome 14: 45,553,302-45,584,804 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 19 domains and features, is associated with 13494 variant alleles and maps to 483 oligo probes.

Gene

This transcript is a product of gene ENSG00000185246.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000355765.6	PRPF39-003	2868	669aa	ENSP00000348010.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9682	Q86UA1	NM_017922.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553605.1	PRPF39-009	582	140aa	ENSP00000452428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5M7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554081.1	PRPF39-007	3223	17aa	ENSP00000451988.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000424478.1	PRPF39-001	3174	152aa	ENSP00000390867.1	Nonsense mediated decay		F8WB90	-	-
ENST00000554439.1	PRPF39-004	2982	152aa	ENSP00000451334.1	Nonsense mediated decay		F8WB90	-	-
ENST00000554429.1	PRPF39-006	2977	152aa	ENSP00000451331.1	Nonsense mediated decay		F8WB90	-	-
ENST00000557477.1	PRPF39-011	724	90aa	ENSP00000452516.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477626.1	PRPF39-002	3507	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554785.1	PRPF39-008	2121	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556353.1	PRPF39-013	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556782.1	PRPF39-010	645	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556718.1	PRPF39-012	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,868 bps, Translation length: 669 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86UA1

CCDS

This transcript is a member of the Human CCDS set: CCDS9682

Version

ENST00000355765.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000319683 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000355765.6 PRPF39-003

Summary