Description
vacuolar protein sorting 39 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20593]
Gene Synonyms
KIAA0770, TLP, VAM6, hVam6p
Location
Chromosome 15: 42,450,899-42,500,514 reverse strand.
GRCh37:CM000677.1
About this gene
This gene has 13 transcripts (splice variants) and 1 paralogue.
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000318006.5 | VPS39-001 | 4844 | 875aa | ENSP00000326534.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS10083 | Q96JC1 | NM_015289.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000348544.4 | VPS39-002 | 2661 | 886aa | ENSP00000335193.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q96JC1 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000564994.1 | VPS39-013 | 629 | 47aa | ENSP00000457325.1 | Nonsense mediated decay | H3BTU0 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000568357.1 | VPS39-004 | 593 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000563692.1 | VPS39-010 | 587 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000562258.1 | VPS39-003 | 4160 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000570062.1 | VPS39-005 | 842 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000568029.1 | VPS39-006 | 791 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000568755.1 | VPS39-012 | 581 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000561797.1 | VPS39-008 | 545 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000561818.1 | VPS39-009 | 537 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000562662.1 | VPS39-011 | 526 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000570023.1 | VPS39-007 | 337 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |