Transcript: ENST00000318006.5 VPS39-001

Description

vacuolar protein sorting 39 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20593]

Gene Synonyms

KIAA0770, TLP, VAM6, hVam6p

Location

Chromosome 15: 42,450,899-42,500,514 reverse strand.

About this transcript

This transcript has 25 exons, is annotated with 10 domains and features, is associated with 20253 variant alleles and maps to 779 oligo probes.

Gene

This transcript is a product of gene ENSG00000166887.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000318006.5	VPS39-001	4844	875aa	ENSP00000326534.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10083	Q96JC1	NM_015289.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348544.4	VPS39-002	2661	886aa	ENSP00000335193.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96JC1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564994.1	VPS39-013	629	47aa	ENSP00000457325.1	Nonsense mediated decay		H3BTU0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000568357.1	VPS39-004	593	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563692.1	VPS39-010	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000562258.1	VPS39-003	4160	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570062.1	VPS39-005	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568029.1	VPS39-006	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568755.1	VPS39-012	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561797.1	VPS39-008	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561818.1	VPS39-009	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562662.1	VPS39-011	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570023.1	VPS39-007	337	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,844 bps, Translation length: 875 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96JC1

CCDS

This transcript is a member of the Human CCDS set: CCDS10083

Version

ENST00000318006.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252861 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000318006.5 VPS39-001

Summary