Description
protocadherin 1 [Source:HGNC Symbol;Acc:8655]
Gene Synonyms
PC42, PCDH42, pc42
Location
Chromosome 5: 141,232,938-141,258,811 reverse strand.
GRCh37:CM000667.1
About this gene
This gene has 10 transcripts (splice variants) and 26 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000287008.3 | PCDH1-002 | 4530 | 1237aa | ENSP00000287008.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS4267 | D6RBG2 Q08174 | NM_032420.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000394536.3 | PCDH1-001 | 3819 | 1060aa | ENSP00000378043.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43375 | D6RBG2 F5H3L5 Q08174 | NM_002587.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000456271.1 | PCDH1-201 | 3769 | 1048aa | ENSP00000403497.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 Q08174 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000357517.5 | PCDH1-005 | 3307 | 1071aa | ENSP00000350122.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 F5H3L5 H0Y2Z9 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000536585.1 | PCDH1-202 | 3307 | 1038aa | ENSP00000438825.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 F5H3L5 | NM_001278613.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000503492.1 | PCDH1-003 | 2373 | 382aa | ENSP00000424667.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RAX3 D6RBG2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000514773.1 | PCDH1-007 | 553 | 150aa | ENSP00000424163.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000515351.1 | PCDH1-006 | 2489 | 17aa | ENSP00000424204.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000505937.1 | PCDH1-008 | 852 | 126aa | ENSP00000424004.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000511044.1 | PCDH1-004 | 2674 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |
