Transcript: ENST00000394536.3 PCDH1-001

Description

protocadherin 1 [Source:HGNC Symbol;Acc:8655]

Gene Synonyms

PC42, PCDH42, pc42

Location

Chromosome 5: 141,242,217-141,257,967 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 55 domains and features, is associated with 7613 variant alleles and maps to 396 oligo probes.

Gene

This transcript is a product of gene ENSG00000156453.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287008.3	PCDH1-002	4530	1237aa	ENSP00000287008.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4267	D6RBG2 Q08174	NM_032420.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394536.3	PCDH1-001	3819	1060aa	ENSP00000378043.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43375	D6RBG2 F5H3L5 Q08174	NM_002587.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456271.1	PCDH1-201	3769	1048aa	ENSP00000403497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBG2 Q08174	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357517.5	PCDH1-005	3307	1071aa	ENSP00000350122.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBG2 F5H3L5 H0Y2Z9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536585.1	PCDH1-202	3307	1038aa	ENSP00000438825.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBG2 F5H3L5	NM_001278613.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503492.1	PCDH1-003	2373	382aa	ENSP00000424667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RAX3 D6RBG2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000514773.1	PCDH1-007	553	150aa	ENSP00000424163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBG2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000515351.1	PCDH1-006	2489	17aa	ENSP00000424204.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505937.1	PCDH1-008	852	126aa	ENSP00000424004.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511044.1	PCDH1-004	2674	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 3,819 bps, Translation length: 1,060 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q08174

CCDS

This transcript is a member of the Human CCDS set: CCDS43375

Version

ENST00000394536.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251862 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394536.3 PCDH1-001

Summary