Description
protocadherin 1 [Source:HGNC Symbol;Acc:8655]
Gene Synonyms
PC42, PCDH42, pc42
Location
Chromosome 5: 141,242,450-141,245,767 reverse strand.
About this transcript
This transcript has 2 exons, is associated with 1769 variant alleles and maps to 285 oligo probes.
Gene
This transcript is a product of gene ENSG00000156453.9 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000287008.3 | PCDH1-002 | 4530 | 1237aa | ENSP00000287008.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS4267 | D6RBG2 Q08174 | NM_032420.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000394536.3 | PCDH1-001 | 3819 | 1060aa | ENSP00000378043.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43375 | D6RBG2 F5H3L5 Q08174 | NM_002587.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000456271.1 | PCDH1-201 | 3769 | 1048aa | ENSP00000403497.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 Q08174 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000357517.5 | PCDH1-005 | 3307 | 1071aa | ENSP00000350122.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 F5H3L5 H0Y2Z9 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000536585.1 | PCDH1-202 | 3307 | 1038aa | ENSP00000438825.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 F5H3L5 | NM_001278613.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000503492.1 | PCDH1-003 | 2373 | 382aa | ENSP00000424667.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RAX3 D6RBG2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000514773.1 | PCDH1-007 | 553 | 150aa | ENSP00000424163.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RBG2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000515351.1 | PCDH1-006 | 2489 | 17aa | ENSP00000424204.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000505937.1 | PCDH1-008 | 852 | 126aa | ENSP00000424004.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000511044.1 | PCDH1-004 | 2674 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |