Description
chondroitin sulfate N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:24290]
Gene Synonyms
CHGN, CSGalNAcT-1, ChGn, FLJ11264, GALNACT1, beta4GalNAcT
Location
Chromosome 8: 19,261,672-19,615,540 reverse strand.
GRCh37:CM000670.1
About this gene
This gene has 18 transcripts (splice variants), 7 paralogues and is associated with 1 phenotype.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000454498.2 | CSGALNACT1-004 | 4232 | 532aa | ENSP00000411816.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6010 | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | NM_001130518.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000332246.6 | CSGALNACT1-001 | 3872 | 532aa | ENSP00000330805.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6010 | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | NM_018371.4 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000311540.4 | CSGALNACT1-201 | 3674 | 532aa | ENSP00000310891.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6010 | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000544602.1 | CSGALNACT1-202 | 2012 | 532aa | ENSP00000442155.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6010 | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000522854.1 | CSGALNACT1-005 | 1990 | 532aa | ENSP00000429809.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS6010 | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000523262.1 | CSGALNACT1-007 | 792 | 104aa | ENSP00000428089.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RGB2 E5RJB6 E5RK93 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000517494.1 | CSGALNACT1-006 | 766 | 96aa | ENSP00000429130.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RGB2 E5RJB6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000520003.1 | CSGALNACT1-012 | 646 | 53aa | ENSP00000428774.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RGB2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000524213.1 | CSGALNACT1-009 | 554 | 14aa | ENSP00000427740.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000397998.3 | CSGALNACT1-002 | 3962 | 297aa | ENSP00000381084.3 | Nonsense mediated decay | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | - | - | |
| ENST00000519222.1 | CSGALNACT1-003 | 2352 | 297aa | ENSP00000428216.1 | Nonsense mediated decay | E5RGB2 E5RJB6 E5RK93 Q8TDX6 | - | - | |
| ENST00000518542.1 | CSGALNACT1-016 | 895 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000523227.1 | CSGALNACT1-010 | 633 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000517651.1 | CSGALNACT1-011 | 582 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000523919.1 | CSGALNACT1-014 | 577 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000524112.1 | CSGALNACT1-013 | 478 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000522573.1 | CSGALNACT1-008 | 405 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000522732.1 | CSGALNACT1-015 | 296 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |
