Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:2188]
Gene Synonyms
BA209D8.1, COL12A1L, DJ234P15.1
Location
Chromosome 6: 75,794,042-75,915,767 reverse strand.
GRCh37:CM000668.1
About this gene
This gene has 10 transcripts (splice variants), 10 paralogues and is associated with 3 phenotypes.
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000322507.8 | COL12A1-001 | 11723 | 3063aa | ENSP00000325146.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43482 | Q99715 | NM_004370.5 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000483888.2 | COL12A1-003 | 9637 | 3062aa | ENSP00000421216.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | D6RGG3 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000416123.2 | COL12A1-009 | 8964 | 2987aa | ENSP00000412864.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q99715 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000345356.6 | COL12A1-002 | 5886 | 1899aa | ENSP00000305147.9 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43481 | Q99715 | NM_080645.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000425443.2 | COL12A1-008 | 3135 | 756aa | ENSP00000399812.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0Y5N9 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000419671.1 | COL12A1-007 | 1914 | 638aa | ENSP00000393217.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
ENST00000493109.2 | COL12A1-006 | 794 | 207aa | ENSP00000423423.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0Y991 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000511023.1 | COL12A1-010 | 571 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000486533.1 | COL12A1-004 | 1554 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000474564.1 | COL12A1-005 | 499 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |