Transcript: ENST00000486533.1 COL12A1-004

Description

collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:2188]

Gene Synonyms

BA209D8.1, COL12A1L, DJ234P15.1

Location

Chromosome 6: 75,887,368-75,898,180 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 4924 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000111799.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322507.8	COL12A1-001	11723	3063aa	ENSP00000325146.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43482	Q99715	NM_004370.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483888.2	COL12A1-003	9637	3062aa	ENSP00000421216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGG3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416123.2	COL12A1-009	8964	2987aa	ENSP00000412864.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q99715	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000345356.6	COL12A1-002	5886	1899aa	ENSP00000305147.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43481	Q99715	NM_080645.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425443.2	COL12A1-008	3135	756aa	ENSP00000399812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y5N9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000419671.1	COL12A1-007	1914	638aa	ENSP00000393217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000493109.2	COL12A1-006	794	207aa	ENSP00000423423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y991	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511023.1	COL12A1-010	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486533.1	COL12A1-004	1554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474564.1	COL12A1-005	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,554 bps,

Version

ENST00000486533.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000041252 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000486533.1 COL12A1-004

Summary