Transcript: ENST00000345356.6 COL12A1-002

Description

collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:2188]

Gene Synonyms

BA209D8.1, COL12A1L, DJ234P15.1

Location

Chromosome 6: 75,796,187-75,915,567 reverse strand.

About this transcript

This transcript has 51 exons, is annotated with 78 domains and features, is associated with 50697 variant alleles and maps to 998 oligo probes.

Gene

This transcript is a product of gene ENSG00000111799.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000322507.8	COL12A1-001	11723	3063aa	ENSP00000325146.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43482	Q99715	NM_004370.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483888.2	COL12A1-003	9637	3062aa	ENSP00000421216.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RGG3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000416123.2	COL12A1-009	8964	2987aa	ENSP00000412864.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q99715	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000345356.6	COL12A1-002	5886	1899aa	ENSP00000305147.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43481	Q99715	NM_080645.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425443.2	COL12A1-008	3135	756aa	ENSP00000399812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y5N9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000419671.1	COL12A1-007	1914	638aa	ENSP00000393217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000493109.2	COL12A1-006	794	207aa	ENSP00000423423.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y991	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511023.1	COL12A1-010	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486533.1	COL12A1-004	1554	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474564.1	COL12A1-005	499	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 51, Coding exons: 50, Transcript length: 5,886 bps, Translation length: 1,899 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99715

CCDS

This transcript is a member of the Human CCDS set: CCDS43481

Version

ENST00000345356.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041250 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000345356.6 COL12A1-002

Summary