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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN21 ENSG00000070778

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Description

protein tyrosine phosphatase, non-receptor type 21 [Source:HGNC Symbol;Acc:9651]

Gene Synonyms

PTPD1, PTPRL10

Location

Chromosome 14: 88,932,122-89,021,077 reverse strand.

GRCh37:CM000676.1

About this gene

This gene has 9 transcripts (splice variants) and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000556564.1	PTPN21-001	6166	1174aa	ENSP00000452414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	NM_007039.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328736.3	PTPN21-201	6089	1174aa	ENSP00000330276.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555243.1	PTPN21-005	1014	195aa	ENSP00000451401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3S6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553531.1	PTPN21-008	704	128aa	ENSP00000450847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ59	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536337.1	PTPN21-003	3943	61aa	ENSP00000443951.1	Nonsense mediated decay		G3V1Q9	-	-
ENST00000554628.1	PTPN21-002	1571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554178.1	PTPN21-007	822	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554270.1	PTPN21-004	4008	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557249.1	PTPN21-006	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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