Transcript: ENST00000556564.1 PTPN21-001

Description

protein tyrosine phosphatase, non-receptor type 21 [Source:HGNC Symbol;Acc:9651]

Gene Synonyms

PTPD1, PTPRL10

Location

Chromosome 14: 88,932,125-89,021,077 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 38 domains and features, is associated with 39600 variant alleles and maps to 979 oligo probes.

Gene

This transcript is a product of gene ENSG00000070778.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000556564.1	PTPN21-001	6166	1174aa	ENSP00000452414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	NM_007039.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328736.3	PTPN21-201	6089	1174aa	ENSP00000330276.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555243.1	PTPN21-005	1014	195aa	ENSP00000451401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3S6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553531.1	PTPN21-008	704	128aa	ENSP00000450847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ59	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536337.1	PTPN21-003	3943	61aa	ENSP00000443951.1	Nonsense mediated decay		G3V1Q9	-	-
ENST00000554628.1	PTPN21-002	1571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554178.1	PTPN21-007	822	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554270.1	PTPN21-004	4008	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557249.1	PTPN21-006	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 6,166 bps, Translation length: 1,174 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16825

CCDS

This transcript is a member of the Human CCDS set: CCDS9884

Version

ENST00000556564.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410303 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000556564.1 PTPN21-001

Summary