Transcript: ENST00000554628.1 PTPN21-002

Description

protein tyrosine phosphatase, non-receptor type 21 [Source:HGNC Symbol;Acc:9651]

Gene Synonyms

PTPD1, PTPRL10

Location

Chromosome 14: 88,959,244-89,017,833 reverse strand.

About this transcript

This transcript has 11 exons, is associated with 25609 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSG00000070778.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000556564.1	PTPN21-001	6166	1174aa	ENSP00000452414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	NM_007039.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328736.3	PTPN21-201	6089	1174aa	ENSP00000330276.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9884	G3V3S6 Q16825 Q8WX29	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555243.1	PTPN21-005	1014	195aa	ENSP00000451401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3S6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553531.1	PTPN21-008	704	128aa	ENSP00000450847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YJ59	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000536337.1	PTPN21-003	3943	61aa	ENSP00000443951.1	Nonsense mediated decay		G3V1Q9	-	-
ENST00000554628.1	PTPN21-002	1571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554178.1	PTPN21-007	822	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554270.1	PTPN21-004	4008	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557249.1	PTPN21-006	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,571 bps,

Version

ENST00000554628.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000410308 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000554628.1 PTPN21-002

Summary