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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CDH9 ENSG00000113100

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Description

cadherin 9, type 2 (T1-cadherin) [Source:HGNC Symbol;Acc:1768]

Location

Chromosome 5: 26,880,709-27,121,257 reverse strand.

GRCh37:CM000667.1

About this gene

This gene has 5 transcripts (splice variants) and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231021.4	CDH9-001	3079	789aa	ENSP00000231021.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3893	D6RBT9 E7EPN0 Q9ULB4	NM_016279.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513289.1	CDH9-005	556	132aa	ENSP00000426239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBT9 E7EPN0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511822.1	CDH9-002	532	81aa	ENSP00000422538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBT9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505020.1	CDH9-004	1836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505045.1	CDH9-003	1801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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