Transcript: ENST00000505020.1 CDH9-004

Description

cadherin 9, type 2 (T1-cadherin) [Source:HGNC Symbol;Acc:1768]

Location

About this transcript

This transcript has 5 exons, is associated with 5517 variant alleles and maps to 243 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231021.4	CDH9-001	3079	789aa	ENSP00000231021.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3893	D6RBT9 E7EPN0 Q9ULB4	NM_016279.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513289.1	CDH9-005	556	132aa	ENSP00000426239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBT9 E7EPN0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511822.1	CDH9-002	532	81aa	ENSP00000422538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBT9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505020.1	CDH9-004	1836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505045.1	CDH9-003	1801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,836 bps,

Version

ENST00000505020.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000366532 (version 1)