Transcript: ENST00000231021.4 CDH9-001

Description

cadherin 9, type 2 (T1-cadherin) [Source:HGNC Symbol;Acc:1768]

Location

About this transcript

This transcript has 12 exons, is annotated with 40 domains and features, is associated with 77547 variant alleles and maps to 460 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000231021.4	CDH9-001	3079	789aa	ENSP00000231021.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3893	D6RBT9 E7EPN0 Q9ULB4	NM_016279.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513289.1	CDH9-005	556	132aa	ENSP00000426239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBT9 E7EPN0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511822.1	CDH9-002	532	81aa	ENSP00000422538.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBT9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000505020.1	CDH9-004	1836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000505045.1	CDH9-003	1801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 3,079 bps, Translation length: 789 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9ULB4

CCDS

This transcript is a member of the Human CCDS set: CCDS3893

Version

ENST00000231021.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000207352 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.