Gene: VPS13B ENSG00000132549

Description

vacuolar protein sorting 13 homolog B (yeast) [Source:HGNC Symbol;Acc:2183]

Gene Synonyms

CHS1, COH1, KIAA0532

Location

Chromosome 8: 100,025,494-100,889,808 forward strand.

GRCh37:CM000670.1

About this gene

This gene has 13 transcripts (splice variants), 3 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358544.2	VPS13B-002	14094	4022aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6280	Q7Z7G8	NM_017890.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000395996.1	VPS13B-201	14160	1427aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z7G8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000357162.2	VPS13B-001	14019	3997aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6281	Q7Z7G8	NM_152564.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000355155.1	VPS13B-004	2822	863aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6283	Q7Z7G8 Q8N509	NM_015243.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000441350.2	VPS13B-006	1626	415aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47903	Q7Z7G8	NM_181661.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000521559.1	VPS13B-009	466	155aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000496144.1	VPS13B-003	5625	1427aa	Nonsense mediated decay		Q7Z7G8	-	-
ENST00000521932.1	VPS13B-007	1055	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522802.1	VPS13B-011	570	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518569.1	VPS13B-012	531	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521037.1	VPS13B-010	486	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524330.1	VPS13B-013	218	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493587.1	VPS13B-005	3485	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Comparative Genomics

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Gene: VPS13B ENSG00000132549

Comparative Genomics