Transcript: ENST00000357162.2 VPS13B-001

Description

vacuolar protein sorting 13 homolog B (yeast) [Source:HGNC Symbol;Acc:2183]

Gene Synonyms

CHS1, COH1, KIAA0532

Location

Chromosome 8: 100,025,494-100,889,808 forward strand.

About this transcript

This transcript has 62 exons, is annotated with 13 domains and features, is associated with 364961 variant alleles and maps to 1657 oligo probes.

Gene

This transcript is a product of gene ENSG00000132549.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395996.1	VPS13B-201	14160	1427aa	ENSP00000379318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z7G8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358544.2	VPS13B-002	14094	4022aa	ENSP00000351346.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6280	Q7Z7G8	NM_017890.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357162.2	VPS13B-001	14019	3997aa	ENSP00000349685.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6281	Q7Z7G8	NM_152564.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355155.1	VPS13B-004	2822	863aa	ENSP00000347281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6283	Q7Z7G8 Q8N509	NM_015243.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441350.2	VPS13B-006	1626	415aa	ENSP00000398472.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47903	Q7Z7G8	NM_181661.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521559.1	VPS13B-009	466	155aa	ENSP00000428809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000496144.1	VPS13B-003	5625	1427aa	ENSP00000430900.1	Nonsense mediated decay		Q7Z7G8	-	-
ENST00000521932.1	VPS13B-007	1055	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522802.1	VPS13B-011	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518569.1	VPS13B-012	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521037.1	VPS13B-010	486	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524330.1	VPS13B-013	218	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493587.1	VPS13B-005	3485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 62, Coding exons: 61, Transcript length: 14,019 bps, Translation length: 3,997 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z7G8

CCDS

This transcript is a member of the Human CCDS set: CCDS6281

Version

ENST00000357162.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000277137 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000357162.2 VPS13B-001

Summary