Human (GRCh37.p13)
Description

vacuolar protein sorting 13 homolog B (yeast) [Source:HGNC Symbol;Acc:2183]

Gene Synonyms

CHS1, COH1, KIAA0532

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 47513 variant alleles and maps to 260 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000395996.1VPS13B-201141601427aaENSP00000379318.1
 
Protein coding
Q7Z7G8 -GENCODE basic
ENST00000358544.2VPS13B-002140944022aaENSP00000351346.2
 
Protein coding
CCDS6280Q7Z7G8 NM_017890.4GENCODE basic
ENST00000357162.2VPS13B-001140193997aaENSP00000349685.2
 
Protein coding
CCDS6281Q7Z7G8 NM_152564.4GENCODE basic
ENST00000355155.1VPS13B-0042822863aaENSP00000347281.1
 
Protein coding
CCDS6283Q7Z7G8 Q8N509 NM_015243.2GENCODE basic
ENST00000441350.2VPS13B-0061626415aaENSP00000398472.2
 
Protein coding
CCDS47903Q7Z7G8 NM_181661.2GENCODE basic
ENST00000521559.1VPS13B-009466155aaENSP00000428809.1
 
Protein coding
--CDS 5' and 3' incomplete
ENST00000496144.1VPS13B-00356251427aaENSP00000430900.1
 
Nonsense mediated decay
Q7Z7G8 --
ENST00000521932.1VPS13B-0071055No protein-
 
Processed transcript
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ENST00000522802.1VPS13B-011570No protein-
 
Processed transcript
---
ENST00000518569.1VPS13B-012531No protein-
 
Processed transcript
---
ENST00000521037.1VPS13B-010486No protein-
 
Processed transcript
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ENST00000524330.1VPS13B-013218No protein-
 
Processed transcript
---
ENST00000493587.1VPS13B-0053485No protein-
 
Retained intron
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Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,626 bps, Translation length: 415 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z7G8

CCDS

This transcript is a member of the Human CCDS set: CCDS47903

Version

ENST00000441350.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs7460625, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-TSI, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-CHB, ESP6500:African_American, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-LWK, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000379820 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.